I'm sure there was nothing wrong with my root install. Every app requiring root worked perfectly, Root Explorer, OTA Rootkeeper, SQLite, TiBu, etc. I wasn't sure what to do after the FDR, but I did update Superuser in Play before testing root. I see that my permissions are wrong on Superuser (in /system/app), but I can't change them without root. Tried the updater and updated binaries, but no joy. Can't restore anything in TiBu without root. Now, I'll have to figure out the Linux root process.