wouldn't the META-INF and system folders conflict because of the same name?
Great question!
Only way I know to explain how this won't cause a conflict, is to explain how the install script works within the patch...
Inside the META-INF\com\google\android\ folder is update-script, which is the installation script file that gives the instructions of what to do. In the case of both of the patches you mention, it just copies the contents of /system/app/* over, which in this case are just a few .apk files. (The installer would create the directories if necessary, but since they already exist, it just copies the files).
No conflicts. The patches will work fine. Hope this better explains. If you have additional questions, by all means ask away!
Edit: Also, to answer your previous question of "Where should I put the files..." IF you were to extract the files from the zip files... the files in the /system/app/ directories within th e.zip file would go to /system/app on your phone...
If you do this via root explorer (no other file manager can do this to my knowledge, because /system is read only, and root explorer has a "Mount RW" option, allowing the copy to go through)... then I would also double check permissions, to make sure they're the same as the other files within the dir. Patching takes care of this.
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