Always do a backup!
For everyone's reference, Just in case I'm not the only one having these issues:
Looks like there's an issue with force closes. I was able to load a stock image, restore a backup that I made before I made all the changes, updated to JB, but kept getting force closes, and "Unfortunately, Motorola Services has stopped" continuously.
--After performing a factory reset, with jellybean, everything went back to normal. Before I reset, I ended up just having to just back up my apps and data the best I could using My Backup Pro... Titanium should work just as well.. and restore them again.
Voodoo root keeper says the phone is rooted, and a backup copy is still available, but SU is not appearing on any root apps, so it did still lose some form of root.
So far I've read that there's not a way to root JB on the razr hd just yet..?
Anyways, as a last resort, in summary, what worked for me is flashing a stock rom using the link below. Like I said, I didn't have any luck restoring my backup data, then upgrading to JB, i just had to bite the bullet and update to JB straight from the stock rom I flashed, and restore apps manually.
You can't update to JB just yet, as there is a 6mb update that your phone downloads first, THEN the JB update follows. This worked without issues for me.
Restore to stock factory firmware and unroot Droid RAZR HD & Maxx HD (XT926) | AndroMods
The methods I've used I've found over the web, and put them here on this post. If you find any of this helpful be sure to give me a thumbs up or whatever you guys call it these days