They are both known to be the same MD5 hash. Maybe the difference that causes the issue is a manual install vs doing it ota. The phone somehow knows what you did, maybe. I have not found an explanation to why or if.
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That's what I thought. I have the leaked 905 update on my SD card but when I got the replacement bionic I did an OTA update (which all it does is reboot into recovery and flashes it just like you'd do manually so. But I just had a thought) and updated from that. Hey, stupid thought time....do you think when they do it OTA they're wiping the cache?